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I would still appreciate any suggestions on keeping my cool. Thanks.

I have never had to do this, but if you go to; e.g.,

http://setiathome.berkeley.edu/prefs.php?subset=global

(your account preferences), you will find a line that reads
"Use at most" where you can set the amount of CPU that can be used.
You might set it to 50% at first and see if that reduces your CPU heat. One setting will handle all your BOINC applications after they contact the server.
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