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Every 90 seconds, the patient has the same conversation, over and over again. One person described her responses as robotic. If you’re given the same set of cues and you output the same response, it would seem that you lack indeterminacy. Did the woman lose her free will while she was experiencing amnesia?

Watching the film of the patient I could see that she generally repeated herself (confusion about the date) but the wording she chose to use differed each time. So while it may have been described as "robotic" it was not like a machine going through an endless loop.

However, whatever the cause, clearly there are decisions that you make without really being aware of why you make them.

Not particularly surprising. But demonstrating unconscious influences or even decision making is not evidence that free will cannot occur. I think we all probably agree that the capacity for consciousness and self-awareness evolved with increasing biological complexity. This would mean our brain, which is a product of that evolution, is capable of both "non-self-aware" behavior as well as that more compatible with free will.

I see free will as a behavioral capability that provides a substantial fitness advantage by allowing novel responses to environmental challenges. Hence we see the evolution of increasingly complex brains that can act increasingly independent from predictable non-conscious determinism. This doesn't mean the human brain must always be self-aware for free will to exist.

Apparently, this is a hotly debated topic in physics. The data and/or interpretation on this topic are contradictory

Yes it is. But it is also not the only area where quantum coherence is believed to play a role in biological systems. A whole subcategory exists called "Quantum Biology" to examine this possibility:

"...The emerging field of quantum biology is concerned with interactions between dynamical phenomena at well-separated length and time scales, from femtosecond energy transfer processes in molecular assemblies at the nanoscale to survival and reproduction within ecosystems at the scales of overall organisms..."
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