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When using a standard brokerage account, how do you keep track of all your transactions and compute your capital gains (FIFO? LIFO?).

This is the first year I have used a program called GainsKeeper and I am quite pleased with it. It keeps track of long-term and short-term capital gains as well as wash sales. It can even download transactions from your broker but I had better luck importing transactions manually (that may have been due to a brokerage issue). I was also able to import my transactions from GainsKeeper to CompleteTax (also highly recommended) and it gave me a nice, detailed (and lengthy) schedule D-1. Give it a look.
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